Do absolutely nothing.
What will occur over time is the following:
1-the sinus membrane will reform over the implant.
2-bone will eventually creep up the exposed sides of the implant. Will it ever completely cover the implant? Never checked, but it doesn't seem to matter if it does not.
3-the only caveats are if the sinus is currently actively infected or particulate graft (usually ceramic or Bioss) has managed to migrate up into the sinus. Sometimes these particulates will get infected, but that is rare.
In my opinion, the vast majority of sinus lifting is unecessary, whether it's a fully open a la Caldwell-Luc or through the osteotomy. If you have 4-5 mm of type 1-2 bone, you're OK. You might add 1-2 mm to that minimum in 3-4 types or postmenopausal women. Also, in my humble opinion, zygomatic implants are an abomination and should never be done. If there is a true indication for a traditional sinus lift, it is this type of patient, particularly in light of the fact that the grafting materials available today are so versatile.
Most Caldwell-Luc type sinus lift approaches are drawn incorrectly in much of the literature I've seen. What I mean by that is the inferior aspect of the osteotomy is too high (typically minimum 5-6 mm or more from the alveolar crest). This approach makes it too easy to perforate the sinus lining (it is thinnest here), and to diffucult to accurately place the graft material (too hard to see it). It is far better to make the osteotomy 2 mm from the crest. Why?
1 - the alveolar bone is thicker here, making it trivial to elevate intact
2 - the sinus lining is thickest in this area, also making it trivial to elevate intact
3- better visualization of the placement of the material. Have to seen some of the severely over-packed maxillary sinsuses on this forum? If you use this approach this is unlikely to happen. Remember that the entire volume of the sinus is 15 ml, so you should rarely exceed 5 mm of graft material.
Should you happen to tear the lining, it's no big deal. Just place a suitably sized resorbable membrane between the sinus lining and graft, and things will heal just peachy.
A final note: In my experience (14+ years), osseointegration is rarely the 100% bone to implant surface area contact we've all been led to believe. My educated guess is that successful osseointegration is somewhere between 50-60% bone to implant surface truely osseintegrated in the classical sense, and may be even less. We've all seen 10 mm dental implants with 3-4 mm actually still remaining in the bone, and yet they're *amazingly* still in function and rock solid stable. Not always of course, but enough to make you wonder.
So there it is in a nutshell. Relax, keep it simple, and everything will work out just fine.